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ASM191549v1

Organism name:
Bacteroides finegoldii (CFB group bacteria)
Taxonomy check:
OK
Isolate:
42_12
BioSample:
SAMN05717221
BioProject:
PRJNA321218
Submitter:
None
Date:
2016/12/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genome length too small
GenBank assembly accession:
GCA_001915495.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNQP01
Assembly method:
IDBA_UD v. 1.1
Genome coverage:
1x
Sequencing technology:
Illumina HiSeq

IDs: 931721 [UID] 3915698 [GenBank]

See Genome Information for Bacteroides finegoldii

There are 68 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 10:55:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,299
CDS (total)::2,266
Genes (coding)::2,035
CDS (coding)::2,035
Genes (RNA)::33
rRNAs::2 (5S)
complete rRNAs::
partial rRNAs::2 (5S)
tRNAs::29
ncRNAs::2
Pseudo Genes (total)::231
Pseudo Genes (ambiguous residues)::39 of 231
Pseudo Genes (frameshifted)::155 of 231
Pseudo Genes (incomplete)::69 of 231
Pseudo Genes (internal stop)::11 of 231
Pseudo Genes (multiple problems)::42 of 231
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,992,278
Total ungapped length2,989,271
Gaps between scaffolds0
Number of scaffolds81
Scaffold N5056,443
Scaffold L5016
Number of contigs136
Contig N5039,857
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,992,278812,989,27156,443550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides finegoldiiBacteroides finegoldii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000156195.1Bacteroides finegoldii DSM 17565suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000156195.1Bacteroides finegoldiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.8473.1344.78
Best-match type96.8473.1344.78

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna