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ASM191630v1

Organism name:
Coprococcus sp. CAG:131_42_139 (firmicutes)
Taxonomy check:
OK
Isolate:
CAG:131_42_139
BioSample:
SAMN05717262
BioProject:
PRJNA321218
Submitter:
None
Date:
2016/12/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_001916305.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNSE01
Assembly method:
IDBA_UD v. 1.1
Genome coverage:
1x
Sequencing technology:
Illumina HiSeq

IDs: 932121 [UID] 3916508 [GenBank]

See Genome Information for Coprococcus sp. CAG:131_42_139

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 11:56:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,725
CDS (total)::1,687
Genes (coding)::1,651
CDS (coding)::1,651
Genes (RNA)::38
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::36
ncRNAs::2
Pseudo Genes (total)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::14 of 36
Pseudo Genes (incomplete)::15 of 36
Pseudo Genes (internal stop)::12 of 36
Pseudo Genes (multiple problems)::5 of 36
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,893,690
Total ungapped length1,893,535
Gaps between scaffolds0
Number of scaffolds14
Scaffold N50262,639
Scaffold L502
Number of contigs16
Contig N50262,639
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,893,690141,893,535262,63920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Coprococcus sp. CAG:131_42_139Coprococcus sp. CAG:131_42_139

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025567285.1Coprococcus acetitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.8086.6250.72

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna