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ASM191839v1

Organism name:
Acidobacteria bacterium 13_1_40CM_4_61_5 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04327895
BioProject:
PRJNA297196
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/12/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001918395.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNFV01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 933161 [UID] 3918628 [GenBank]

See Genome Information for Acidobacteria bacterium 13_1_40CM_4_61_5

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/25/2016 20:16:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,525
CDS (total)::1,506
Genes (coding)::1,292
CDS (coding)::1,292
Genes (RNA)::19
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::15
ncRNAs::1
Pseudo Genes (total)::214
Pseudo Genes (ambiguous residues)::39 of 214
Pseudo Genes (frameshifted)::37 of 214
Pseudo Genes (incomplete)::150 of 214
Pseudo Genes (internal stop)::4 of 214
Pseudo Genes (multiple problems)::16 of 214
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,589,196
Total ungapped length1,582,707
Gaps between scaffolds0
Number of scaffolds124
Scaffold N5013,223
Scaffold L5045
Number of contigs208
Contig N5010,418
Contig L5054
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)124

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,589,1961241,582,70713,223840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acidobacteria bacterium 13_1_40CM_4_61_5Acidobacteria bacterium 13_1_40CM_4_61_5

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_027587195.1Solirubrobacter phytolaccaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type73.760.010.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena