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ASM277102v1

Organism name:
Xanthomonadales bacterium CG17_big_fil_post_rev_8_21_14_2_50_64_11 (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
CG17_big_fil_post_rev_8_21_14_2_50_64_11
BioSample:
SAMN06659608
BioProject:
PRJNA362739
Submitter:
None
Date:
2017/11/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002771025.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PCUP01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1439071 [UID] 5643778 [GenBank]

See Genome Information for Xanthomonadales bacterium CG17_big_fil_post_rev_8_21_14_2_50_64_11

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/05/2017 17:51:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,786
CDS (total)::2,746
Genes (coding)::2,601
CDS (coding)::2,601
Genes (RNA)::40
tRNAs::36
ncRNAs::4
Pseudo Genes (total)::145
Pseudo Genes (ambiguous residues)::103 of 145
Pseudo Genes (frameshifted)::33 of 145
Pseudo Genes (incomplete)::37 of 145
Pseudo Genes (internal stop)::4 of 145
Pseudo Genes (multiple problems)::32 of 145
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,019,338
Total ungapped length3,007,016
Gaps between scaffolds0
Number of scaffolds255
Scaffold N5016,651
Scaffold L5052
Number of contigs503
Contig N5011,916
Contig L5074
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)255

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,019,3382553,007,01616,6512480

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xanthomonadales bacterium CG17_big_fil_post_rev_8_21_14_2_50_64_11Xanthomonadales bacterium CG17_big_fil_post_rev_8_21_14_2_50_64_11

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010093205.1Pseudoxanthomonas daejeonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.762.602.20

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena