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Source database (GenBank or RefSeq) File type

Brassica_rapa_FPsc_v1.3

Organism name:: Brassica rapa (field mustard)
Infraspecific name:: Cultivar: FPsc (B3)
BioSample:: SAMN00004054
BioProject:: PRJNA41163
Submitter:: JGI
Date:: 2018/09/13
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_003434825.1 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: QMKI01
Assembly method:: Meraculous v. May_2013
Genome coverage:: 155x
Sequencing technology:: Illumina Hiseq

IDs: 1980291 [UID] 7449228 [GenBank]

See Genome Information for Brassica rapa

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Total sequence length	314,865,497
Total ungapped length	250,019,625
Gaps between scaffolds	1,426
Number of scaffolds	7,071
Scaffold N50	478,658
Scaffold L50	167
Number of contigs	43,858
Contig N50	17,500
Contig L50	4,148
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	40,430

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Assembly Information

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Brassica_rapa_FPsc_v1.3 - Genome - Assembly - NCBI
Brassica_rapa_FPsc_v1.3 - Genome - Assembly - NCBI

Assembly

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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

Assembly Unit: Primary Assembly (GCA_003434835.1)

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM010628.1	n/a	n/a	0
Chromosome A2	CM010629.1	n/a	n/a	0
Chromosome A3	CM010630.1	n/a	n/a	0
Chromosome A4	CM010631.1	n/a	n/a	0
Chromosome A5	CM010632.1	n/a	n/a	0
Chromosome A6	CM010633.1	n/a	n/a	0
Chromosome A7	CM010634.1	n/a	n/a	0
Chromosome A8	CM010635.1	n/a	n/a	0
Chromosome A9	CM010636.1	n/a	n/a	0
Chromosome A10	CM010637.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	5,635

Assembly statistics

Primary Assembly

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	314,865,497	7,071	250,019,625	478,658	36,787	1,426
Chromosome A1	30,984,273	193	24,451,158	397,594	3,181	192
Chromosome A2	32,762,445	153	26,137,421	448,778	3,042	152
Chromosome A3	25,115,505	84	21,376,590	1,324,690	1,695	83
Chromosome A4	21,597,147	103	17,710,983	623,786	1,847	102
Chromosome A5	28,488,603	165	22,451,247	428,045	2,725	164
Chromosome A6	29,376,280	141	23,602,395	665,136	2,810	140
Chromosome A7	27,477,424	155	22,316,187	463,479	2,503	154
Chromosome A8	23,189,089	97	18,902,215	608,312	2,108	96
Chromosome A9	44,888,295	264	35,489,525	418,373	4,674	263
Chromosome A10	19,914,974	81	16,237,419	719,099	1,905	80
unplaced	31,071,462	5,635	21,344,485	30,128	10,297	0