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ASM366148v1

Organism name:
Candidatus Geothermarchaeota archaeon (archaea)
Taxonomy check:
Inconclusive
Isolate:
B85_G16
BioSample:
SAMN09214948
BioProject:
PRJNA362212
Submitter:
The University of Texas at Austin
Date:
2018/10/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003661485.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QMWF01
Assembly method:
megahit v. 1.0.6
Expected final version:
yes
Genome coverage:
20.8648648648649x
Sequencing technology:
Illumina HiSeq

IDs: 2020271 [UID] 7588898 [GenBank]

See Genome Information for Candidatus Geothermarchaeota archaeon

There are 16 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/30/2018 09:21:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,170
CDS (total)::1,145
Genes (coding)::1,133
CDS (coding)::1,133
Genes (RNA)::25
tRNAs::23
ncRNAs::2
Pseudo Genes (total)::12
Pseudo Genes (ambiguous residues)::0 of 12
Pseudo Genes (frameshifted)::7 of 12
Pseudo Genes (incomplete)::3 of 12
Pseudo Genes (internal stop)::4 of 12
Pseudo Genes (multiple problems)::2 of 12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length958,108
Total ungapped length958,108
Number of contigs185
Contig N505,525
Contig L5054
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)185

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced958,108185958,1085,52500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Geothermarchaeota archaeonCandidatus Geothermarchaeota archaeon

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana