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Vangularis_v1

Organism name:
Vigna angularis var. angularis (adzuki bean)
Infraspecific name:
Cultivar: Shumari
BioSample:
SAMD00028456
BioProject:
PRJDB3778
Submitter:
National Institute of Agrobiological Sciences, Japan
Date:
2015/12/17
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_004320505.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
sprai-0.9.5.1.3; Celera Assembler v. 8.2beta
Genome coverage:
51X
Sequencing technology:
PacBio RSII; Illumina HiSeq2500

IDs: 2334381 [UID] 8688128 [GenBank]

See Genome Information for Vigna angularis

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Vigna Genome Server (VigGS)

URL:http://viggs.dna.affrc.go.jp

Global statistics

Total sequence length522,761,097
Total ungapped length513,383,440
Gaps between scaffolds0
Number of scaffolds2,261
Scaffold N5038,860,970
Scaffold L506
Number of contigs2,920
Contig N501,575,115
Contig L5085
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)2,261

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_004320515.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1AP015034.1n/an/a0
Chromosome 2AP015035.1n/an/a0
Chromosome 3AP015036.1n/an/a0
Chromosome 4AP015037.1n/an/a0
Chromosome 5AP015038.1n/an/a0
Chromosome 6AP015039.1n/an/a0
Chromosome 7AP015040.1n/an/a0
Chromosome 8AP015041.1n/an/a0
Chromosome 9AP015042.1n/an/a0
Chromosome 10AP015043.1n/an/a0
Chromosome 11AP015044.1n/an/a0
unplacedn/an/an/a2,250

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All522,761,0972,261513,383,44038,860,9706590
Chromosome 167,115,795165,886,27467,115,795540
Chromosome 245,515,668145,061,54845,515,668610
Chromosome 343,462,759141,929,75643,462,759520
Chromosome 454,073,736153,434,06154,073,736580
Chromosome 537,380,367136,866,21737,380,367460
Chromosome 638,860,970138,755,45538,860,970380
Chromosome 733,495,452132,009,84233,495,452390
Chromosome 846,951,433146,406,38146,951,433500
Chromosome 937,388,052135,698,74037,388,052430
Chromosome 1028,886,040128,759,43728,886,040360
Chromosome 1138,115,440137,384,58538,115,440350
unplaced51,515,3852,25051,191,14432,9001470