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ASM1340703v1

Organism name:
Coloeus monedula (jackdaw)
Isolate:
S_Up_J01
Sex:
male
BioSample:
SAMN14646012
BioProject:
PRJNA626609
Submitter:
Univerisity of Munich
Date:
2020/07/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_013407035.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JABDSK01
Assembly method:
FALCON-Unzip v. 0.4.0
Expected final version:
yes
Genome coverage:
64.0x
Sequencing technology:
PacBio; Hi-C

IDs: 7341991 [UID] 20322988 [GenBank]

See Genome Information for Coloeus monedula

History (Show revision history)

Comment

Runs of 499 N's represent unknown length gaps based on optical mapping

Global statistics

Total sequence length1,035,863,955
Total ungapped length1,032,959,578
Gaps between scaffolds0
Number of scaffolds41
Scaffold N5073,777,161
Scaffold L505
Number of contigs552
Contig N5023,262,489
Contig L5015
Total number of chromosomes and plasmids29
Number of component sequences (WGS or clone)41

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013407105.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM023912.1n/an/a0
Chromosome 1ACM023939.1n/an/a0
Chromosome 2CM023913.1n/an/a0
Chromosome 3CM023914.1n/an/a0
Chromosome 4CM023915.1n/an/a0
Chromosome 4ACM023940.1n/an/a0
Chromosome 5CM023916.1n/an/a0
Chromosome 6CM023917.1n/an/a0
Chromosome 7CM023918.1n/an/a0
Chromosome 8CM023919.1n/an/a0
Chromosome 9CM023920.1n/an/a0
Chromosome 10CM023921.1n/an/a0
Chromosome 11CM023922.1n/an/a0
Chromosome 12CM023923.1n/an/a0
Chromosome 13CM023924.1n/an/a0
Chromosome 14CM023925.1n/an/a0
Chromosome 15CM023926.1n/an/a0
Chromosome 17CM023927.1n/an/a0
Chromosome 18CM023928.1n/an/a0
Chromosome 19CM023929.1n/an/a0
Chromosome 20CM023930.1n/an/a0
Chromosome 21CM023931.1n/an/a0
Chromosome 22CM023932.1n/an/a0
Chromosome 23CM023933.1n/an/a0
Chromosome 24CM023934.1n/an/a0
Chromosome 26CM023935.1n/an/a0
Chromosome 27CM023936.1n/an/a0
Chromosome 28CM023937.1n/an/a0
Chromosome ZCM023938.1n/an/a0
unplacedn/an/an/a12

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,035,863,955411,032,959,57873,777,1615110
Chromosome 1117,486,4091117,441,981117,486,409140
Chromosome 1A73,777,161173,723,25973,777,16180
Chromosome 2154,487,6461154,166,590154,487,646570
Chromosome 3110,910,7131110,894,005110,910,71370
Chromosome 473,157,438173,129,37773,157,438110
Chromosome 4A20,605,299120,604,80020,605,29910
Chromosome 564,157,287163,780,93764,157,287600
Chromosome 636,532,927136,532,92736,532,92700
Chromosome 738,277,055138,248,93438,277,055110
Chromosome 832,060,782131,889,53732,060,782300
Chromosome 926,026,359126,026,35926,026,35900
Chromosome 1020,701,202120,700,20420,701,20220
Chromosome 1120,977,607120,977,60720,977,60700
Chromosome 1221,032,122121,032,12221,032,12200
Chromosome 1319,121,564119,119,20019,121,56420
Chromosome 1416,609,512116,609,51216,609,51200
Chromosome 1511,237,182111,232,52811,237,18230
Chromosome 1711,032,243111,032,24311,032,24300
Chromosome 1811,176,533111,170,31111,176,53330
Chromosome 1911,217,504111,217,50411,217,50400
Chromosome 2014,997,001114,995,50414,997,00130
Chromosome 216,847,63016,847,6306,847,63000
Chromosome 224,839,89814,839,3994,839,89810
Chromosome 238,585,40018,295,2348,585,400390
Chromosome 246,907,20116,904,2456,907,20120
Chromosome 266,615,93816,614,4416,615,93830
Chromosome 274,573,16814,573,1684,573,16800
Chromosome 285,735,23215,346,2445,735,232430
Chromosome Z79,982,351179,295,29179,982,3511390
unplaced6,195,591125,718,485969,433720