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ASM1825784v1

Organism name:
Chlamydomonas reinhardtii (green algae)
Infraspecific name:
Strain: CC-503 CW92
BioSample:
SAMN18499640
BioProject:
PRJNA717658
Submitter:
None
Date:
2021/05/04
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_018257845.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGJGU01
Assembly method:
Hifiasm v. 14; gcpp v. 1.9.0; purge_dups v. 1.2.3
Expected final version:
yes
Reference guided assembly:
GCA_000002595.3
Genome coverage:
110.0x
Sequencing technology:
PacBio Sequel

IDs: 9992621 [UID] 26596998 [GenBank]

See Genome Information for Chlamydomonas reinhardtii

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length112,471,279
Total ungapped length112,469,599
Gaps between scaffolds0
Number of scaffolds19
Scaffold N506,862,525
Scaffold L507
Number of contigs26
Contig N505,839,277
Contig L508
Total number of chromosomes and plasmids17
Number of component sequences (WGS or clone)19

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_018257875.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM031089.1n/an/a0
Chromosome 2CM031090.1n/an/a0
Chromosome 3CM031091.1n/an/a0
Chromosome 4CM031092.1n/an/a0
Chromosome 5CM031093.1n/an/a0
Chromosome 6CM031094.1n/an/a0
Chromosome 7CM031095.1n/an/a0
Chromosome 8CM031096.1n/an/a0
Chromosome 9CM031097.1n/an/a0
Chromosome 10CM031098.1n/an/a0
Chromosome 11CM031099.1n/an/a0
Chromosome 12CM031100.1n/an/a0
Chromosome 13CM031101.1n/an/a0
Chromosome 14CM031102.1n/an/a0
Chromosome 15CM031103.1n/an/a0
Chromosome 16CM031104.1n/an/a0
Chromosome 17CM031105.1n/an/a0
unplacedn/an/an/a2

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All112,471,27919112,469,5996,862,52570
Chromosome 18,012,24218,012,2428,012,24200
Chromosome 29,488,37519,488,1359,488,37510
Chromosome 39,111,42319,111,4239,111,42300
Chromosome 44,141,67414,141,6744,141,67400
Chromosome 53,592,93813,592,6983,592,93810
Chromosome 69,305,17919,304,9399,305,17910
Chromosome 76,406,97316,406,9736,406,97300
Chromosome 84,505,71114,505,7114,505,71100
Chromosome 95,766,46515,766,4655,766,46500
Chromosome 106,692,19116,692,1916,692,19100
Chromosome 115,336,16615,335,9265,336,16610
Chromosome 129,400,66619,400,1869,400,66620
Chromosome 135,419,38015,419,1405,419,38010
Chromosome 144,143,70214,143,7024,143,70200
Chromosome 154,646,54314,646,5434,646,54300
Chromosome 167,867,01617,867,0167,867,01600
Chromosome 176,862,52516,862,5256,862,52500
unplaced1,772,11021,772,1101,102,66600