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ASM2035090v1

Organism name:
Deltaproteobacteria bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
bin435
BioSample:
SAMN17669638
BioProject:
PRJNA575161
Submitter:
Tongji University
Date:
2021/10/07
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_020350905.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
SPAdes v. 3.11.1; Megahit v. 1.1.3; IDBA v. 1.1.2
Expected final version:
yes
Genome coverage:
24x
Sequencing technology:
Illumina HiSeq

IDs: 11120071 [UID] 29364928 [GenBank]

See Genome Information for Deltaproteobacteria bacterium

There are 2574 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/22/2021 13:56:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,482
CDSs (total)::3,459
Genes (coding)::3,424
CDSs (with protein)::3,424
Genes (RNA)::23
tRNAs::21
ncRNAs::2
Pseudo Genes (total)::35
CDSs (without protein)::35
Pseudo Genes (ambiguous residues)::0 of 35
Pseudo Genes (frameshifted)::7 of 35
Pseudo Genes (incomplete)::15 of 35
Pseudo Genes (internal stop)::14 of 35
Pseudo Genes (multiple problems)::1 of 35
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,647,774
Total ungapped length3,589,874
Gaps between scaffolds0
Number of scaffolds1
Scaffold N503,647,774
Scaffold L501
Number of contigs579
Contig N507,492
Contig L50161
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_020350915.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP070843.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 3,647,77413,589,8743,647,7745790

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deltaproteobacteria bacteriumDeltaproteobacteria bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana