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Source database (GenBank or RefSeq) File type

ASM2035600v1

Organism name:

Thermoplasmata archaeon (archaea)

Taxonomy check:

Inconclusive

Isolate:

bin983

BioSample:

SAMN17669737

BioProject:

PRJNA575161

Submitter:

Tongji University

Date:

2021/10/07

Assembly type:

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_020356005.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

Assembly method:

SPAdes v. 3.11.1; Megahit v. 1.1.3; IDBA v. 1.1.2

Expected final version:

yes

Genome coverage:

24x

Sequencing technology:

Illumina HiSeq

IDs: 11122661 [UID] 29370088 [GenBank]

See Genome Information for Thermoplasmata archaeon

Pathogen Detection Resources

There are 1299 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020356005.1	n/a	n/a	ASM2035600v1	Chromosome	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/19/2021 15:13:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,538
CDSs (total)::2,507
Genes (coding)::2,499
CDSs (with protein)::2,499
Genes (RNA)::31
rRNAs::2 (5S)
complete rRNAs::2 (5S)
tRNAs::27
ncRNAs::2
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::1 of 8
Pseudo Genes (incomplete)::4 of 8
Pseudo Genes (internal stop)::3 of 8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,578,571
Total ungapped length	3,542,871
Gaps between scaffolds	0
Number of scaffolds	1
Scaffold N50	3,578,571
Scaffold L50	1
Number of contigs	357
Contig N50	14,498
Contig L50	79
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	na	0.00	0.00

Assembly

Genome Assembly

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Download Assembly

ASM2035600v1

See Genome Information for Thermoplasmata archaeon

Pathogen Detection Resources

There are 1299 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

Related Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result