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Zm-CML322-REFERENCE-NAM-1.0

Organism name:
Zea mays (maize)
Infraspecific name:
Cultivar: CML322
BioSample:
SAMEA5313305
BioProject:
PRJEB31061
Submitter:
MaizeGDB
Date:
2020/03/21
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_902167095.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CABHLK01
Genome coverage:
66x

IDs: 6455561 [UID] 18105818 [GenBank]

See Genome Information for Zea mays

Pathogen Detection Resources

There are 109 assemblies for this organism

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History (Show revision history)

Comment

whole genome assembly of NAM founder line CML322

Global statistics

Total sequence length2,219,249,226
Total ungapped length2,216,048,367
Gaps between scaffolds0
Number of scaffolds1,268
Scaffold N50220,372,307
Scaffold L505
Number of contigs1,872
Contig N5030,550,178
Contig L5024
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)1,290

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_902167094.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LR624066.1n/an/a0
Chromosome 2LR624067.1n/an/a0
Chromosome 3LR624068.1n/an/a0
Chromosome 4LR624069.1n/an/a0
Chromosome 5LR624070.1n/an/a0
Chromosome 6LR624071.1n/an/a0
Chromosome 7LR624072.1n/an/a0
Chromosome 8LR624073.1n/an/a0
Chromosome 9LR624074.1n/an/a0
Chromosome 10LR624075.1n/an/a0
unplacedn/an/an/a1,258

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,219,249,2261,2682,216,048,367220,372,3076040
Chromosome 1304,927,5221304,700,737304,927,522320
Chromosome 2244,091,9221243,984,734244,091,922300
Chromosome 3240,124,6811240,110,388240,124,68160
Chromosome 4257,448,6991256,281,120257,448,6992150
Chromosome 5220,372,3071220,219,293220,372,307440
Chromosome 6175,451,9951174,914,794175,451,995990
Chromosome 7179,528,1241179,301,494179,528,124410
Chromosome 8180,532,5921180,476,844180,532,592220
Chromosome 9166,149,5721165,743,332166,149,572830
Chromosome 10151,455,4341151,432,735151,455,434130
unplaced99,166,3781,25898,882,89686,711190