NOD_ShiLtJ_v3

Organism name:: Mus musculus (house mouse)
BioSample:: SAMEA9544187
BioProject:: PRJEB47108
Submitter:: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:: 2022/07/01
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_921998325.2 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: CAKLHO02
Genome coverage:: 40x

IDs: 13301081 [UID] 34743938 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_921998325.2	n/a	n/a	NOD_ShiLtJ_v3	Chromosome	Latest GenBank
GCA_921998325.1	n/a	n/a	NOD_ShiLtJ_v2	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	2,517,363,844
Total ungapped length	2,504,799,153
Gaps between scaffolds	0
Number of scaffolds	168
Scaffold N50	127,269,091
Scaffold L50	9
Number of contigs	964
Contig N50	6,749,549
Contig L50	119
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	168

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OW971783.1	n/a	n/a	0
Chromosome 2	OW971784.1	n/a	n/a	0
Chromosome 3	OW971785.1	n/a	n/a	0
Chromosome 4	OW971786.1	n/a	n/a	0
Chromosome 5	OW971788.1	n/a	n/a	0
Chromosome 6	OW971789.1	n/a	n/a	0
Chromosome 7	OW971790.1	n/a	n/a	0
Chromosome 8	OW971792.1	n/a	n/a	0
Chromosome 9	OW971793.1	n/a	n/a	0
Chromosome 10	OW971791.1	n/a	n/a	0
Chromosome 11	OW971794.1	n/a	n/a	0
Chromosome 12	OW971797.1	n/a	n/a	0
Chromosome 13	OW971795.1	n/a	n/a	0
Chromosome 14	OW971796.1	n/a	n/a	0
Chromosome 15	OW971798.1	n/a	n/a	0
Chromosome 16	OW971799.1	n/a	n/a	0
Chromosome 17	OW971800.1	n/a	n/a	0
Chromosome 18	OW971801.1	n/a	n/a	0
Chromosome 19	OW971802.1	n/a	n/a	0
Chromosome X	OW971787.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	147

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,517,347,543	167	2,504,782,852	127,269,091	796
Chromosome 1	192,317,747	1	192,099,999	192,317,747	51
Chromosome 2	175,739,506	1	175,656,330	175,739,506	51
Chromosome 3	157,877,467	1	157,031,912	157,877,467	56
Chromosome 4	148,348,604	1	146,974,371	148,348,604	59
Chromosome 5	144,859,791	1	143,703,756	144,859,791	37
Chromosome 6	146,533,518	1	145,903,951	146,533,518	41
Chromosome 7	133,237,724	1	130,910,700	133,237,724	49
Chromosome 8	124,682,026	1	124,187,670	124,682,026	37
Chromosome 9	121,132,517	1	121,098,432	121,132,517	34
Chromosome 10	127,269,091	1	126,597,898	127,269,091	33
Chromosome 11	119,263,463	1	119,232,139	119,263,463	16
Chromosome 12	111,740,221	1	111,372,359	111,740,221	40
Chromosome 13	114,942,767	1	113,858,321	114,942,767	39
Chromosome 14	113,938,999	1	113,378,695	113,938,999	33
Chromosome 15	101,071,700	1	100,957,829	101,071,700	23
Chromosome 16	94,826,401	1	94,668,715	94,826,401	35
Chromosome 17	90,608,376	1	90,441,803	90,608,376	25
Chromosome 18	87,697,973	1	87,625,661	87,697,973	25
Chromosome 19	57,932,146	1	57,865,464	57,932,146	15
Chromosome X	147,422,267	1	145,311,654	147,422,267	95
unplaced	5,905,239	147	5,905,193	62,830	2

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NOD_ShiLtJ_v3

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear