A_J_v3

Organism name:: Mus musculus (house mouse)
BioSample:: SAMEA9544179
BioProject:: PRJEB47108
Submitter:: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:: 2022/06/30
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_921998355.2 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: CAKLHP02
Genome coverage:: 40x

IDs: 13301041 [UID] 34743838 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_921998355.2	n/a	n/a	A_J_v3	Chromosome	Latest GenBank
GCA_921998355.1	n/a	n/a	A_J_v2	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	2,528,261,066
Total ungapped length	2,512,849,197
Gaps between scaffolds	0
Number of scaffolds	158
Scaffold N50	127,192,181
Scaffold L50	9
Number of contigs	488
Contig N50	16,959,821
Contig L50	45
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	158

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OW971741.1	n/a	n/a	0
Chromosome 2	OW971742.1	n/a	n/a	0
Chromosome 3	OW971743.1	n/a	n/a	0
Chromosome 4	OW971745.1	n/a	n/a	0
Chromosome 5	OW971746.1	n/a	n/a	0
Chromosome 6	OW971747.1	n/a	n/a	0
Chromosome 7	OW971748.1	n/a	n/a	0
Chromosome 8	OW971750.1	n/a	n/a	0
Chromosome 9	OW971751.1	n/a	n/a	0
Chromosome 10	OW971749.1	n/a	n/a	0
Chromosome 11	OW971752.1	n/a	n/a	0
Chromosome 12	OW971754.1	n/a	n/a	0
Chromosome 13	OW971753.1	n/a	n/a	0
Chromosome 14	OW971755.1	n/a	n/a	0
Chromosome 15	OW971756.1	n/a	n/a	0
Chromosome 16	OW971757.1	n/a	n/a	0
Chromosome 17	OW971758.1	n/a	n/a	0
Chromosome 18	OW971759.1	n/a	n/a	0
Chromosome 19	OW971760.1	n/a	n/a	0
Chromosome X	OW971744.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	137

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,528,244,766	157	2,512,832,897	127,192,181	330
Chromosome 1	192,437,849	1	192,401,813	192,437,849	21
Chromosome 2	177,903,603	1	176,314,487	177,903,603	15
Chromosome 3	156,763,892	1	156,682,054	156,763,892	22
Chromosome 4	149,306,169	1	148,147,722	149,306,169	18
Chromosome 5	145,117,840	1	144,393,257	145,117,840	24
Chromosome 6	145,922,365	1	145,900,625	145,922,365	17
Chromosome 7	135,949,505	1	132,883,797	135,949,505	27
Chromosome 8	124,455,652	1	124,335,243	124,455,652	19
Chromosome 9	120,824,376	1	120,812,839	120,824,376	10
Chromosome 10	127,192,181	1	126,852,701	127,192,181	11
Chromosome 11	118,915,852	1	118,915,803	118,915,852	2
Chromosome 12	115,069,314	1	113,441,207	115,069,314	15
Chromosome 13	115,222,695	1	114,404,074	115,222,695	16
Chromosome 14	113,709,041	1	113,400,709	113,709,041	16
Chromosome 15	101,074,573	1	101,070,735	101,074,573	9
Chromosome 16	94,605,886	1	94,604,429	94,605,886	10
Chromosome 17	91,989,066	1	91,422,077	91,989,066	16
Chromosome 18	87,897,412	1	87,896,351	87,897,412	5
Chromosome 19	58,145,355	1	58,091,273	58,145,355	3
Chromosome X	150,996,385	1	146,120,597	150,996,385	50
unplaced	4,745,755	137	4,741,104	47,832	4

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A_J_v3

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear