NZO_HlLtJ_v3

Organism name:: Mus musculus (house mouse)
BioSample:: SAMEA9544188
BioProject:: PRJEB47108
Submitter:: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:: 2022/12/18
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_947593165.1 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: CANQFN01
Assembly method:: falcon-kit 1.8.1
Genome coverage:: 40x
Sequencing technology:: Pacbio

IDs: 15445501 [UID] 39730068 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_947593165.1	n/a	n/a	NZO_HlLtJ_v3	Chromosome	Latest GenBank

Comment

Global statistics

Total sequence length	2,822,921,548
Total ungapped length	2,822,876,737
Gaps between scaffolds	0
Number of scaffolds	383
Scaffold N50	137,857,036
Scaffold L50	9
Number of contigs	616
Contig N50	32,925,788
Contig L50	24
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	383

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OX389795.1	n/a	n/a	0
Chromosome 2	OX389796.1	n/a	n/a	0
Chromosome 3	OX389797.1	n/a	n/a	0
Chromosome 4	OX389798.1	n/a	n/a	0
Chromosome 5	OX389799.1	n/a	n/a	0
Chromosome 6	OX389800.1	n/a	n/a	0
Chromosome 7	OX389801.1	n/a	n/a	0
Chromosome 8	OX389802.1	n/a	n/a	0
Chromosome 9	OX389803.1	n/a	n/a	0
Chromosome 10	OX389804.1	n/a	n/a	0
Chromosome 11	OX389805.1	n/a	n/a	0
Chromosome 12	OX389806.1	n/a	n/a	0
Chromosome 13	OX389807.1	n/a	n/a	0
Chromosome 14	OX389808.1	n/a	n/a	0
Chromosome 15	OX389809.1	n/a	n/a	0
Chromosome 16	OX389810.1	n/a	n/a	0
Chromosome 17	OX389811.1	n/a	n/a	0
Chromosome 18	OX389812.1	n/a	n/a	0
Chromosome 19	OX389813.1	n/a	n/a	0
Chromosome X	OX389794.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	362

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,822,905,246	382	2,822,860,435	137,857,036	233
Chromosome 1	200,234,477	1	200,230,676	200,234,477	13
Chromosome 2	187,412,582	1	187,409,682	187,412,582	9
Chromosome 3	161,916,618	1	161,915,418	161,916,618	5
Chromosome 4	163,249,191	1	163,245,491	163,249,191	21
Chromosome 5	160,975,567	1	160,973,367	160,975,567	12
Chromosome 6	150,693,533	1	150,690,333	150,693,533	12
Chromosome 7	141,784,723	1	141,782,624	141,784,723	8
Chromosome 8	137,857,036	1	137,854,736	137,857,036	8
Chromosome 9	122,237,724	1	122,236,224	122,237,724	7
Chromosome 10	133,344,508	1	133,342,708	133,344,508	7
Chromosome 11	122,436,954	1	122,436,354	122,436,954	2
Chromosome 12	123,994,834	1	123,992,734	123,994,834	8
Chromosome 13	121,607,866	1	121,605,966	121,607,866	8
Chromosome 14	121,254,721	1	121,253,721	121,254,721	7
Chromosome 15	104,617,462	1	104,615,262	104,617,462	8
Chromosome 16	100,550,635	1	100,547,635	100,550,635	10
Chromosome 17	96,907,583	1	96,906,483	96,907,583	4
Chromosome 18	89,861,325	1	89,860,425	89,861,325	3
Chromosome 19	62,939,505	1	62,939,105	62,939,505	3
Chromosome X	174,301,082	1	174,296,882	174,301,082	20
unplaced	144,727,320	362	144,724,609	1,160,449	58

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

NZO_HlLtJ_v3

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear