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odSpoOffi2.Longimicrobiales_1.1

Organism name:
Longimicrobiales bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
b3959559-3b23-4102-94a7-0dacaa5f4209
BioSample:
SAMEA114406302
BioProject:
PRJEB68406
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2023/11/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_963667485.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
various
Genome coverage:
66x
Sequencing technology:
PacBio,Arima

IDs: 19812381 [UID] 50285558 [GenBank]

See Genome Information for Longimicrobiales bacterium

There are 99 assemblies for this organism

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History (Show revision history)

Comment

The metagenome-assembled genome assembly odSpoOffi2.Longimicrobiales_1.1 is based on 66x PacBio data and Arima Hi-C data generated by the Aquatic Symbiosis Genomics Project (https://www.aquaticsymbiosisgenomics.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm and ... coverage-, graph-, and HiC-based contig binning.  more

Global statistics

Total sequence length4,827,414
Total ungapped length4,827,414
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_963667484.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1OY763418.1n/an/a
Chromosome 2OY763419.1n/an/a

Assembly statistics

MoleculeTotal
Length
All4,827,414
Chromosome 11,798,540
Chromosome 23,028,874

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Longimicrobiales bacteriumLongimicrobiales bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028875625.1Candidatus Palauibacter polyketidifacienssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.081.542.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena