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seqoccin.Bt.char.SAMEA114541728.v1.0

Organism name:
Bos taurus (cattle)
Infraspecific name:
Strain: mammals
BioSample:
SAMEA114541728
BioProject:
PRJEB55064
Submitter:
INRAE
Date:
2023/12/22
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_963920255.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAWUBF01
Assembly method:
Wtdbg2
Genome coverage:
58x
Sequencing technology:
GeT-PlaGe

IDs: 20312871 [UID] 51396328 [GenBank]

See Genome Information for Bos taurus

Pathogen Detection Resources

There are 26 assemblies for this organism

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History (Show revision history)

Comment

'The Research Institute for Agriculture, Food and Environment INRAE, with the support of a consortium of private companies and Occitanie region, carried out the SeqOccIn research program. The size of of the assemby is 2.6
Gb. The assembly was completed ... additionally Hi-C and 10X Chromium reads were used to improve assembly. The BUSCO score of 92.6% was evaluated on conserved mammal genes.'  more

Global statistics

Total sequence length2,642,145,753
Total ungapped length2,641,383,374
Gaps between scaffolds0
Number of scaffolds3,791
Scaffold N50103,650,328
Scaffold L5011
Number of contigs5,463
Contig N5015,542,257
Contig L5053
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,791

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,642,145,7533,7912,641,383,374103,650,3281,6720