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ASM17587v1

Organism name:
Campylobacter gracilis RM3268 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RM3268
BioSample:
SAMN00000715
BioProject:
PRJNA31021
Submitter:
J. Craig Venter Institute
Date:
2009/09/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000175875.1 (latest)
RefSeq assembly accession:
GCF_000175875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACYG01

IDs: 219798 [UID] 219778 [GenBank] 219798 [RefSeq]

See Genome Information for Campylobacter gracilis

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.
Genome Coverage: 21x
Sequencing Technology: 454
Product names were updated in June 2013

Global statistics

Total sequence length2,255,573
Total ungapped length2,255,573
Number of contigs33
Contig N50203,752
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,255,573332,255,573203,75200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter gracilis RM3268Campylobacter gracilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001190745.1Campylobacter gracilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001190745.1Campylobacter gracilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.0098.86
Best-match type99.99100.0098.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna