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ASM22297v1

Organism name:: Yersinia pestis A1122 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: A1122
BioSample:: SAMN02603531
BioProject:: PRJNA67155
Submitter:: Los Alamos National Lab
Date:: 2011/08/05
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000222975.1 (latest)
RefSeq assembly accession:: GCF_000222975.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 369568 [UID] 298348 [GenBank] 369568 [RefSeq]

See Genome Information for Yersinia pestis

Pathogen Detection Resources

There are 1054 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000222975.1	=	GCF_000222975.1	ASM22297v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000222975.1-RS_2024_04_06
Annotation Date::04/06/2024 01:18:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,240
CDSs (total)::4,144
Genes (coding)::3,951
CDSs (with protein)::3,951
Genes (RNA)::96
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::10
Pseudo Genes (total)::193
CDSs (without protein)::193
Pseudo Genes (ambiguous residues)::0 of 193
Pseudo Genes (frameshifted)::84 of 193
Pseudo Genes (incomplete)::123 of 193
Pseudo Genes (internal stop)::26 of 193
Pseudo Genes (multiple problems)::32 of 193
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,658,411
Total ungapped length	4,658,411
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP002956.1	=	NC_017168.1
Plasmid unnamed	CP002957.1	=	NC_017169.1
Plasmid unnamed2	CP002958.1	=	NC_017170.1

Molecule	Total Length
All	4,658,411
Chromosome	4,553,770
Plasmid unnamed	96,210
Plasmid unnamed2	8,431

	ANI	Query coverage	Subject coverage
Declared type	99.98	99.60	97.13
Best-match type	99.98	99.60	97.13

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ASM22297v1

See Genome Information for Yersinia pestis

Pathogen Detection Resources

There are 1054 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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