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EriEur2.0

Organism name:
Erinaceus europaeus (western European hedgehog)
Isolate:
Erinaceus europaeus_13Jul2011
Sex:
female
BioSample:
SAMN00760989
BioProject:
PRJNA74585
Submitter:
Broad Institute
Date:
2012/09/19
Synonyms:
eriEur2
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000296755.1 (latest)
RefSeq assembly accession:
GCF_000296755.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
AMDU01
Assembly method:
allpaths v. R41008
Genome coverage:
79x
Sequencing technology:
Illumina Hi-Seq

IDs: 426148 [UID] 426148 [GenBank] 1008498 [RefSeq]

See Genome Information for Erinaceus europaeus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Neil J. Gemmell, Center for Reproduction and Genomics, University of Otago, Dunedin, New Zealand.

Global statistics

Total sequence length2,715,703,478
Total ungapped length2,333,056,088
Gaps between scaffolds0
Number of scaffolds5,802
Scaffold N503,264,618
Scaffold L50249
Number of contigs225,566
Contig N5021,359
Contig L5031,120
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)225,566

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,715,703,4785,8022,333,056,0883,264,618219,7640