Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

AaSCC4092v2.0

Organism name:: Aggregatibacter actinomycetemcomitans serotype b str. SCC4092 (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Serotype: b
Infraspecific name:: Strain: SCC4092
BioSample:: SAMN02471977
BioProject:: PRJNA91105
Submitter:: Bumgarner laboratory, Department of Microbiology, University of Washington
Date:: 2015/08/17
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_000332935.2 (latest)
RefSeq assembly accession:: GCF_000332935.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AJMF02
Assembly method:: Velvet v. 1.2.09
Expected final version:: yes
Genome coverage:: 77.385965x
Sequencing technology:: Illumina MiSeq; 454

IDs: 472721 [UID] 2239748 [GenBank] 2298358 [RefSeq]

See Genome Information for Aggregatibacter actinomycetemcomitans

Pathogen Detection Resources

There are 187 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000332935.2	=	GCF_000332935.2	AaSCC4092v2.0	Scaffold	Latest GenBank, Latest RefSeq
GCA_000332935.1	=	GCF_000332935.1	Aact_scc4092_v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::06/11/2014 17:30:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.6 (rev. 437579)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::1,934
CDS::1,845
Pseudo Genes::39
rRNAs::4 (5S, 16S, 23S)
tRNAs::45
ncRNA::1
Frameshifted Genes::28
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,099,572
Total ungapped length	2,038,660
Gaps between scaffolds	0
Number of scaffolds	31
Scaffold N50	125,567
Scaffold L50	6
Number of contigs	52
Contig N50	75,957
Contig L50	10
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	31

	ANI	Query coverage	Subject coverage
Declared type	99.05	95.74	93.58
Best-match type	99.05	95.74	93.58

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

AaSCC4092v2.0

See Genome Information for Aggregatibacter actinomycetemcomitans

Pathogen Detection Resources

There are 187 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result