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ASM34154v2

Organism name:
Nitrospina gracilis 3/211 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 3/211
BioSample:
SAMEA2272521
BioProject:
PRJEB1269
Submitter:
Univie
Date:
2013/08/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000341545.2 (latest)
RefSeq assembly accession:
GCF_000341545.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAQJ01

IDs: 63321 [UID] 780868 [GenBank] 858688 [RefSeq]

See Genome Information for Nitrospina gracilis

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,077,713
Total ungapped length3,067,213
Gaps between scaffolds0
Number of scaffolds4
Scaffold N503,072,611
Scaffold L501
Number of contigs109
Contig N5057,037
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)109

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,077,71343,067,2133,072,6111050

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospina gracilis 3/211Nitrospina gracilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_946900835.1Nitrospina watsoniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.5456.3557.39

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected