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GS De Novo Assembly

Organism name:
Serratia marcescens EGD-HP20 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: EGD-HP20
BioSample:
SAMN02469683
BioProject:
PRJNA211617
Submitter:
National Environmental Engineering Research Institute-CSIR
Date:
2013/09/11
Assembly type:
na
Release type:
minor
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000465615.2 (latest)
RefSeq assembly accession:
GCF_000465615.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AVSR01
Assembly method:
GS De Novo Assembler v. 2.6
Expected final version:
yes
Genome coverage:
37.0x
Sequencing technology:
Illumina MiSeq

IDs: 568441 [UID] 2548908 [GenBank] 2649838 [RefSeq]

See Genome Information for Serratia marcescens

There are 2680 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Environmental Genomics Division, CSIR-NEERI, India Source DNA available from Environmental Genomics Division, CSIR-NEERI, India

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/26/2013 18:24:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.1 (rev. 410183)
Features Annotated::Gene; CDS; rRNA; tRNA; repeat_region
Genes::4,824
CDS::4,734
Pseudo Genes::6
CRISPR Arrays::3
rRNAs::5 ( 5S, 16S, 23S )
tRNAs::79
Frameshifted Genes::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,077,620
Total ungapped length5,077,620
Number of contigs61
Contig N50189,845
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,077,620615,077,620189,84500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia marcescens EGD-HP20Serratia marcescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900457055.1Serratia marcescenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900457055.1Serratia marcescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9091.1089.80
Best-match type96.9091.1089.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna