U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM48491v1

Organism name:
Euryarchaeota archaeon SCGC AAA286-E23 (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SCGC AAA286-E23
BioSample:
SAMN02441439
BioProject:
PRJNA190810
Submitter:
DOE Joint Genome Institute
Date:
2013/10/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_000484915.1 (latest)
RefSeq assembly accession:
GCF_000484915.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AXWI01
Assembly method:
Unknown program v. before 2013-03-06
Single-cell amplification:
Yes
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 72901 [UID] 832648 [GenBank] 1571228 [RefSeq]

See Genome Information for Euryarchaeota archaeon SCGC AAA286-E23

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1014080
Source DNA and Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Source DNA available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Contacts: Ramunas Stepanauskas (rstepanauskas@bigelow.org)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Euryarchaeota archaeon SCGC AAA286-E23
sequencing_meth::WGS
GOLD Stamp ID::Gi22692
##MIGS-Data-END##

Global statistics

Total sequence length512,945
Total ungapped length512,945
Number of contigs54
Contig N5016,111
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced512,94554512,94516,11100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Euryarchaeota archaeon SCGC AAA286-E23Euryarchaeota archaeon SCGC AAA286-E23

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana