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Source database (GenBank or RefSeq) File type

Cse_v1.0

Organism name:

Cynoglossus semilaevis (tongue sole)

Isolate:

Cse_v1.0

BioSample:

SAMN02595200

BioProject:

PRJNA73987

Submitter:

Beijing Genomics Institute

Date:

2014/01/28

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000523025.1 (latest)

RefSeq assembly accession:

GCF_000523025.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

AGRG01

Assembly method:

SOAPdenovo v. April-2011

Genome coverage:

117x (male); 94x (female)

Sequencing technology:

Illumina HiSeq2000

IDs: 95041 [UID] 898028 [GenBank] 1137958 [RefSeq]

See Genome Information for Cynoglossus semilaevis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000523025.1	≠	GCF_000523025.1	Cse_v1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	470,199,494
Total ungapped length	446,041,774
Gaps between scaffolds	1,538
Number of scaffolds	31,181
Scaffold N50	509,861
Scaffold L50	289
Number of contigs	62,912
Contig N50	27,008
Contig L50	4,682
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	62,912

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM002373.1	=	NC_024307.1	0
Chromosome 2	CM002374.1	=	NC_024308.1	0
Chromosome 3	CM002375.1	=	NC_024309.1	0
Chromosome 4	CM002376.1	=	NC_024310.1	0
Chromosome 5	CM002377.1	=	NC_024311.1	0
Chromosome 6	CM002378.1	=	NC_024312.1	0
Chromosome 7	CM002379.1	=	NC_024313.1	0
Chromosome 8	CM002380.1	=	NC_024314.1	0
Chromosome 9	CM002381.1	=	NC_024315.1	0
Chromosome 10	CM002382.1	=	NC_024316.1	0
Chromosome 11	CM002383.1	=	NC_024317.1	0
Chromosome 12	CM002384.1	=	NC_024318.1	0
Chromosome 13	CM002385.1	=	NC_024319.1	0
Chromosome 14	CM002386.1	=	NC_024320.1	0
Chromosome 15	CM002387.1	=	NC_024321.1	0
Chromosome 16	CM002388.1	=	NC_024322.1	0
Chromosome 17	CM002389.1	=	NC_024323.1	0
Chromosome 18	CM002390.1	=	NC_024324.1	0
Chromosome 19	CM002391.1	=	NC_024325.1	0
Chromosome 20	CM002392.1	=	NC_024326.1	0
Chromosome W	CM002393.1	=	NC_024327.1	0
Chromosome Z	CM002394.1	=	NC_024328.1	0
unplaced	n/a	n/a	n/a	29,620

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	470,182,763	31,180	446,025,043	509,861	31,731	1,538
Chromosome 1	34,528,841	118	32,787,618	476,606	2,270	117
Chromosome 2	20,052,193	57	19,258,068	560,865	1,162	56
Chromosome 3	16,251,686	57	15,466,964	622,889	1,127	56
Chromosome 4	20,010,643	62	19,375,734	494,512	1,191	61
Chromosome 5	19,279,693	62	18,608,957	444,881	1,080	61
Chromosome 6	18,840,743	55	18,112,491	554,743	1,206	54
Chromosome 7	13,814,722	38	13,184,780	593,719	951	37
Chromosome 8	30,151,083	79	28,612,255	709,644	2,045	78
Chromosome 9	19,616,557	69	18,787,706	386,135	1,226	68
Chromosome 10	21,015,401	62	20,080,276	499,340	1,436	61
Chromosome 11	20,528,231	71	19,674,246	432,143	1,344	70
Chromosome 12	18,396,836	61	17,483,993	542,191	1,279	60
Chromosome 13	21,921,923	65	20,957,344	651,074	1,437	64
Chromosome 14	28,847,931	79	27,666,633	598,055	1,690	78
Chromosome 15	20,091,810	66	19,130,758	525,480	1,399	65
Chromosome 16	18,785,820	50	17,872,626	637,480	1,191	49
Chromosome 17	16,464,107	45	15,581,397	668,296	1,275	44
Chromosome 18	15,207,555	43	14,403,653	636,708	1,042	42
Chromosome 19	17,744,385	50	17,113,604	490,703	1,047	49
Chromosome 20	15,231,414	39	14,353,734	522,831	989	38
Chromosome W	16,446,795	306	13,014,947	128,400	2,089	305
Chromosome Z	21,910,988	26	20,752,968	1,300,535	1,978	25
unplaced	25,043,406	29,620	23,744,291	1,915	1,277	0

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Cse_v1.0

See Genome Information for Cynoglossus semilaevis

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear