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Source database (GenBank or RefSeq) File type

Oliveri

Organism name:: Brucella canis str. Oliveri (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: Oliveri
BioSample:: SAMEA3138887
BioProject:: PRJEB4803
Submitter:: UDEA
Date:: 2014/01/24
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000530495.1 (latest)
RefSeq assembly accession:: GCF_000530495.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 28x

IDs: 98071 [UID] 904248 [GenBank] 1493458 [RefSeq]

See Genome Information for Brucella canis

Pathogen Detection Resources

There are 29 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000530495.1	=	GCF_000530495.1	Oliveri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000530495.1-RS_2024_04_23
Annotation Date::04/23/2024 00:59:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,224
CDSs (total)::3,167
Genes (coding)::3,012
CDSs (with protein)::3,012
Genes (RNA)::57
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::155
CDSs (without protein)::155
Pseudo Genes (ambiguous residues)::0 of 155
Pseudo Genes (frameshifted)::99 of 155
Pseudo Genes (incomplete)::37 of 155
Pseudo Genes (internal stop)::38 of 155
Pseudo Genes (multiple problems)::17 of 155
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,318,655
Total ungapped length	3,300,183
Gaps between scaffolds	0
Number of scaffolds	2
Scaffold N50	2,111,919
Scaffold L50	1
Number of contigs	22
Contig N50	364,249
Contig L50	3
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	HG803175.1	=	NZ_HG803175.1
Chromosome II	HG803176.1	=	NZ_HG803176.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,318,655	2	3,300,183	2,111,919	20
Chromosome I	2,111,919	1	2,093,447	2,111,919	20
Chromosome II	1,206,736	1	1,206,736	1,206,736	0

	ANI	Query coverage	Subject coverage
Declared type	99.98	99.88	99.50
Best-match type	99.66	98.54	98.70

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Oliveri

See Genome Information for Brucella canis

Pathogen Detection Resources

There are 29 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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