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ASM73801v1

Organism name:
Bacillus stercoris (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: D7XPN1
BioSample:
SAMN02697041
BioProject:
PRJNA240915
Submitter:
Microbial Gene Research and Resources Facility
Date:
2014/08/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000738015.1 (latest)
RefSeq assembly accession:
GCF_000738015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHCA01
Assembly method:
Newbler v. 2.9
Expected final version:
no
Genome coverage:
40.0x
Sequencing technology:
IonTorrent

IDs: 202501 [UID] 1185868 [GenBank] 14337178 [RefSeq]

See Genome Information for Bacillus stercoris

There are 17 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from: Bharat Patel, Microbial Gene Research and Resources Facility, Griffith University, Kessels Road, Brisbane, Australia

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::03/25/2014 20:14:11
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.4 (rev. 429283)
Genes::4,021
CDS::3,033
Pseudo Genes::917
rRNAs::4 ( 5S, 16S, 23S )
tRNAs::66
ncRNA::1
Frameshifted Genes::907
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,079,419
Total ungapped length4,079,419
Number of contigs28
Contig N50504,008
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,079,419284,079,419504,00800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus stercorisBacillus stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.3591.4488.49

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna