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N.barLL02

Description:
Novosphingobium barchaimii LL02
Organism name:
Novosphingobium barchaimii LL02 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:25411
Infraspecific name:
Strain: LL02
BioSample:
SAMN02727999
BioProject:
PRJNA227256
Submitter:
CSIRO
Date:
2015/07/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001046635.1 (latest)
RefSeq assembly accession:
GCF_001046635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACU01
Assembly method:
ABySS v. 1.3.5
Expected final version:
no
Genome coverage:
80.0x
Sequencing technology:
Illumina HiSeq

IDs: 615431 [UID] 2780028 [GenBank] 2788078 [RefSeq]

See Genome Information for Novosphingobium barchaimii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from DSMZ 25411.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/09/2014 15:10:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.3 (rev. 423251)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,089
CDS::4,985
Pseudo Genes::30
rRNAs::16 (5S, 16S, 23S)
tRNAs::57
ncRNA::1
Frameshifted Genes::12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,313,474
Total ungapped length5,307,348
Gaps between scaffolds0
Number of scaffolds19
Scaffold N50797,132
Scaffold L503
Number of contigs26
Contig N50797,132
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,313,474195,307,348797,13270

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Novosphingobium barchaimii LL02Novosphingobium barchaimii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021227995.1Novosphingobium kaempferiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.3337.2834.72

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected