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Source database (GenBank or RefSeq) File type

ASM127287v1

Organism name:: Mycoplasmoides pneumoniae (Filterable agent of primary atypical pneumonia)
Taxonomy check:: OK
Infraspecific name:: Strain: M2192
BioSample:: SAMN03252343
BioProject:: PRJNA269312
Submitter:: University of Alabama at Birmingham
Date:: 2015/08/21
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_001272875.1 (latest)
RefSeq assembly accession:: GCF_001272875.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: ABySS v. 1.3.7
Genome coverage:: at least 300x
Sequencing technology:: Illumina MiSeq

IDs: 475481 [UID] 2290588 [GenBank] 2299148 [RefSeq]

See Genome Information for Mycoplasmoides pneumoniae

Pathogen Detection Resources

There are 291 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001272875.1	=	GCF_001272875.1	ASM127287v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and Source DNA available from Kevin Dybvig, Center for Clinical and Translational Science, University of Alabama at Birmingham, Birmingham, AL 35294, USA
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be ... found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/26/2024 16:02:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::766
CDSs (total)::724
Genes (coding)::675
CDSs (with protein)::675
Genes (RNA)::42
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::29 of 49
Pseudo Genes (incomplete)::17 of 49
Pseudo Genes (internal stop)::17 of 49
Pseudo Genes (multiple problems)::14 of 49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	817,169
Total ungapped length	817,169
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.96	99.99	99.98
Best-match type	99.96	99.99	99.98

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ASM127287v1

See Genome Information for Mycoplasmoides pneumoniae

Pathogen Detection Resources

There are 291 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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