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ASM155873v1

Organism name:
Pantoea agglomerans (enterobacteria)
Infraspecific name:
Strain: FDAARGOS_160
BioSample:
SAMN03996307
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2016/02/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001558735.1 (replaced)
RefSeq assembly accession:
GCF_001558735.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP3 v. Oct 2014
Genome coverage:
406.902x
Sequencing technology:
PacBio; Illumina

IDs: 640581 [UID] 2874248 [GenBank] 2877238 [RefSeq]

See Genome Information for Pantoea agglomerans

There are 281 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/21/2016 08:58:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,500
CDS (total)::4,393
Genes (coding)::4,241
CDS (coding)::4,241
Genes (RNA)::107
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
partial rRNAs::
tRNAs::76
ncRNAs::9
Pseudo Genes (total)::152
Pseudo Genes (ambiguous residues)::0 of 152
Pseudo Genes (frameshifted)::94 of 152
Pseudo Genes (incomplete)::33 of 152
Pseudo Genes (internal stop)::58 of 152
Pseudo Genes (multiple problems)::30 of 152
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,808,813
Total ungapped length4,808,813
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001558745.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014129.1=NZ_CP014129.1
Plasmid unnamed1CP014126.1=NZ_CP014126.1
Plasmid unnamed2CP014127.1=NZ_CP014127.1
Plasmid unnamed3CP014128.1=NZ_CP014128.1

Assembly statistics

MoleculeTotal
Length
All4,808,813
Chromosome 4,050,093
Plasmid unnamed190,507
Plasmid unnamed2470,301
Plasmid unnamed3197,912