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ASM161886v1

Organism name:
Luteitalea pratensis (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 100886
BioSample:
SAMN04546182
BioProject:
PRJNA314952
Submitter:
Leibniz Institute DSMZ
Date:
2016/04/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001618865.1 (latest)
RefSeq assembly accession:
GCF_001618865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP SMRTPortal v. 2.3.0
Genome coverage:
112x
Sequencing technology:
PacBio; Illumina HiSeq 2500

IDs: 724861 [UID] 3188478 [GenBank] 6612678 [RefSeq]

See Genome Information for Luteitalea pratensis

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 10:09:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,245
CDSs (total)::6,189
Genes (coding)::6,145
CDSs (with protein)::6,145
Genes (RNA)::56
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::11 of 44
Pseudo Genes (incomplete)::40 of 44
Pseudo Genes (internal stop)::1 of 44
Pseudo Genes (multiple problems)::7 of 44
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,480,314
Total ungapped length7,480,314
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001618875.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP015136.1=NZ_CP015136.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,480,314

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Luteitalea pratensisLuteitalea pratensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020859565.1Saccharothrix luteolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.260.060.04

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected