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ASM164098v1

Organism name:
Proteus mirabilis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AOUC-001
BioSample:
SAMN04849770
BioProject:
PRJNA318385
Submitter:
University of Siena
Date:
2016/05/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001640985.1 (latest)
RefSeq assembly accession:
GCF_001640985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PbCR v. 8.3
Genome coverage:
260x
Sequencing technology:
Illumina; PacBio

IDs: 738401 [UID] 3227738 [GenBank] 3233588 [RefSeq]

See Genome Information for Proteus mirabilis

There are 3743 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 11:41:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,073
CDSs (total)::3,965
Genes (coding)::3,857
CDSs (with protein)::3,857
Genes (RNA)::108
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::82
ncRNAs::4
Pseudo Genes (total)::108
CDSs (without protein)::108
Pseudo Genes (ambiguous residues)::0 of 108
Pseudo Genes (frameshifted)::40 of 108
Pseudo Genes (incomplete)::70 of 108
Pseudo Genes (internal stop)::21 of 108
Pseudo Genes (multiple problems)::19 of 108
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,272,433
Total ungapped length4,272,433
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001640995.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP015347.1=NZ_CP015347.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,272,433

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Proteus mirabilisProteus mirabilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160755.1Proteus mirabilis ATCC 29906type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000160755.1Proteus mirabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3086.7893.27
Best-match type99.3086.7893.27

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna