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ASM170929v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Isolate:
23
BioSample:
SAMN04448241
BioProject:
PRJNA296771
Submitter:
Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion
Date:
2016/08/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001709295.1 (latest)
RefSeq assembly accession:
GCF_001709295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. v. 3
Expected final version:
yes
Genome coverage:
137.0x
Sequencing technology:
PacBio

IDs: 784711 [UID] 3412288 [GenBank] 3419718 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 68275 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/25/2023 01:55:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,352
CDSs (total)::5,227
Genes (coding)::5,085
CDSs (with protein)::5,085
Genes (RNA)::125
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::87
ncRNAs::13
Pseudo Genes (total)::142
CDSs (without protein)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::73 of 142
Pseudo Genes (incomplete)::68 of 142
Pseudo Genes (internal stop)::21 of 142
Pseudo Genes (multiple problems)::17 of 142
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,483,848
Total ungapped length5,483,848
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001709305.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016926.1=NZ_CP016926.1
Plasmid pCTXM15_DHQP1400954CP016925.1=NZ_CP016925.1
Plasmid pIncFIB_DHQP1400954CP016924.1=NZ_CP016924.1
Plasmid pIncL_M_DHQP1400954CP016927.1=NZ_CP016927.1

Assembly statistics

MoleculeTotal
Length
All5,483,848
Chromosome 5,236,925
Plasmid pCTXM15_DHQP140095463,291
Plasmid pIncFIB_DHQP1400954111,539
Plasmid pIncL_M_DHQP140095472,093

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2087.7684.05
Best-match type99.2087.7684.05

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna