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H_comes_QL1_v1

  • Anomalous assembly.
Organism name:
Hippocampus comes (tiger tail seahorse)
Isolate:
QL1
Sex:
male
BioSample:
SAMN04531611
BioProject:
PRJNA314292
Submitter:
South China Sea Institute of Oceanology, Chinese Academy of Sciences
Date:
2016/12/08
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_001891065.1 (replaced)
RefSeq assembly accession:
GCF_001891065.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
LVHJ01
Assembly method:
SOAPdenovo v. 2.04
Genome coverage:
192x
Sequencing technology:
Illumina HiSeq 2000

IDs: 905941 [UID] 3769548 [GenBank] 3932528 [RefSeq]

See Genome Information for Hippocampus comes

History (Show revision history)

Comment

In May 2022 4587 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length493,775,940
Total ungapped length459,367,008
Gaps between scaffolds0
Number of scaffolds37,377
Scaffold N502,034,572
Scaffold L5063
Number of contigs60,478
Contig N5039,546
Contig L503,292
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)60,478

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced493,759,41537,376459,350,4832,034,57223,1010
MoleculeTotal
Length
Mitochondrion MT16,525