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Source database (GenBank or RefSeq) File type

ASM200744v2

This assembly has been replaced. See current version

Anomalous assembly.

Organism name:

Ailuropoda melanoleuca (giant panda)

Isolate:

Jingjing

Sex:

female

BioSample:

SAMN04193337

BioProject:

PRJNA588422

Submitter:

Institute of Zoology, Chinese Academy of Sciences

Date:

2020/04/20

Assembly level:

Chromosome

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_002007445.2 (replaced)

RefSeq assembly accession:

GCF_002007445.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

LNAT02

Assembly method:

Scaff10X v. Sep-2017

Expected final version:

yes

Genome coverage:

93.0x

Sequencing technology:

Illumina; 10X Genomics; Flow-sorted chromosome sequencing

IDs: 7064301 [UID] 19437608 [GenBank] 19639048 [RefSeq]

See Genome Information for Ailuropoda melanoleuca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002007445.3	≠	GCF_002007445.2	ASM200744v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_002007445.2	≠	GCF_002007445.1	ASM200744v2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_002007445.1	n/a	n/a	ASM200744v1	Scaffold	Replaced GenBank

Comment

In April 2022 3774 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	2,444,077,458
Total ungapped length	2,397,267,045
Gaps between scaffolds	0
Number of scaffolds	77,288
Scaffold N50	129,245,720
Scaffold L50	8
Number of contigs	127,086
Contig N50	127,363
Contig L50	5,347
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	77,288

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM022819.1	=	NC_048218.1	0
Chromosome 2	CM022820.1	=	NC_048219.1	0
Chromosome 3	CM022821.1	=	NC_048220.1	0
Chromosome 4	CM022822.1	=	NC_048221.1	0
Chromosome 5	CM022823.1	=	NC_048222.1	0
Chromosome 6	CM022824.1	=	NC_048223.1	0
Chromosome 7	CM022825.1	=	NC_048224.1	0
Chromosome 8	CM022826.1	=	NC_048225.1	0
Chromosome 9	CM022827.1	=	NC_048226.1	0
Chromosome 10	CM022828.1	=	NC_048227.1	0
Chromosome 11	CM022829.1	=	NC_048228.1	0
Chromosome 12	CM022830.1	=	NC_048229.1	0
Chromosome 13	CM022831.1	=	NC_048230.1	0
Chromosome 14	CM022832.1	=	NC_048231.1	0
Chromosome 15	CM022833.1	=	NC_048232.1	0
Chromosome 16	CM022834.1	=	NC_048233.1	0
Chromosome 17	CM022835.1	=	NC_048234.1	0
Chromosome 18	CM022836.1	=	NC_048235.1	0
Chromosome 19	CM022837.1	=	NC_048236.1	0
Chromosome 20	CM022838.1	=	NC_048237.1	0
Chromosome X	CM022839.1	=	NC_048238.1	0
unplaced	n/a	n/a	n/a	77,266

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,444,060,653	77,287	2,397,250,240	129,245,720	49,798
Chromosome 1	212,770,937	1	209,365,606	212,770,937	3,019
Chromosome 2	199,809,881	1	196,878,387	199,809,881	2,827
Chromosome 3	147,627,920	1	145,876,855	147,627,920	2,138
Chromosome 4	144,794,249	1	142,102,192	144,794,249	2,206
Chromosome 5	130,990,914	1	129,345,555	130,990,914	1,725
Chromosome 6	131,587,389	1	129,509,294	131,587,389	2,143
Chromosome 7	141,533,052	1	138,988,642	141,533,052	2,066
Chromosome 8	129,245,720	1	127,273,673	129,245,720	2,071
Chromosome 9	103,688,518	1	101,927,606	103,688,518	1,645
Chromosome 10	110,580,333	1	108,928,816	110,580,333	1,720
Chromosome 11	110,513,224	1	108,310,362	110,513,224	1,702
Chromosome 12	81,781,225	1	80,558,361	81,781,225	1,425
Chromosome 13	92,459,488	1	90,906,396	92,459,488	1,629
Chromosome 14	106,650,358	1	104,775,843	106,650,358	1,556
Chromosome 15	91,612,352	1	90,138,112	91,612,352	1,520
Chromosome 16	91,341,929	1	89,938,149	91,341,929	1,415
Chromosome 17	42,246,006	1	41,376,705	42,246,006	858
Chromosome 18	38,124,791	1	37,466,745	38,124,791	639
Chromosome 19	35,683,536	1	34,956,093	35,683,536	598
Chromosome 20	30,944,335	1	30,411,331	30,944,335	623
Chromosome X	112,850,221	1	111,496,342	112,850,221	1,773
unplaced	157,224,275	77,266	146,719,175	3,580	14,500

Assembly

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ASM200744v2

See Genome Information for Ailuropoda melanoleuca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear