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ASM200913v1

Organism name:
Bacillus subtilis subsp. subtilis str. 168 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 168
BioSample:
SAMN06268590
BioProject:
PRJNA368655
Submitter:
Georg-August-University Goettingen
Date:
2017/03/02
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002009135.1 (latest)
RefSeq assembly accession:
GCF_002009135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 3.8
Genome coverage:
missing
Sequencing technology:
Illumina

IDs: 1014151 [UID] 4164308 [GenBank] 4167468 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1066 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Joerg Stuelke, Goettingen.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2024 01:39:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,429
CDSs (total)::4,308
Genes (coding)::4,248
CDSs (with protein)::4,248
Genes (RNA)::121
rRNAs::10, 10, 10 (5S, 16S, 23S)
complete rRNAs::10, 10, 10 (5S, 16S, 23S)
tRNAs::86
ncRNAs::5
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::32 of 60
Pseudo Genes (incomplete)::34 of 60
Pseudo Genes (internal stop)::10 of 60
Pseudo Genes (multiple problems)::13 of 60
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,215,385
Total ungapped length4,215,156
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,215,385
Scaffold L501
Number of contigs2
Contig N504,107,278
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002009145.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019663.1=NZ_CP019663.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 4,215,38514,215,1564,215,38510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilis subsp. subtilis str. 168Bacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002009095.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002009095.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.9999.99
Best-match type99.9899.9999.99

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna