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Sdu_1.0

Organism name:
Seriola dumerili (greater amberjack)
Isolate:
Sdu_G_001
BioSample:
SAMD00083043
BioProject:
PRJDB5856
Submitter:
Genomic breeding group, Research Center for Aquatic Breeding, National Research Institute of aquaculture, FRA
Date:
2017/08/03
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002260705.1 (latest)
RefSeq assembly accession:
GCF_002260705.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
BDQW01
Assembly method:
Velvet v. 1.2.08; Platanus v. 1.2.1; SOAPdenovo v. 2.01; PBJelly v. 15.2.20
Genome coverage:
210X
Sequencing technology:
Hiseq2500; PacBio RSII

IDs: 1175871 [UID] 4942168 [GenBank] 5148798 [RefSeq]

See Genome Information for Seriola dumerili

History (Show revision history)

Comment

Global statistics

Total sequence length677,686,174
Total ungapped length672,127,919
Gaps between scaffolds0
Number of scaffolds34,656
Scaffold N505,812,906
Scaffold L5029
Number of contigs41,188
Contig N50249,509
Contig L50771
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)34,656

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced677,669,64434,655672,111,3895,812,9066,5320
MoleculeTotal
Length
Mitochondrion MT16,530