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Source database (GenBank or RefSeq) File type

Aet v5.0

Organism name:

Aegilops tauschii subsp. strangulata (monocots)

Infraspecific name:

Cultivar: AL8/78

BioSample:

SAMN05426520

BioProject:

PRJNA341983

Submitter:

Johns Hopkins University

Date:

2021/09/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002575655.2 (latest)

RefSeq assembly accession:

GCF_002575655.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

NWVB02

Assembly method:

FALCON v. 2

Expected final version:

Genome coverage:

36.0x

Sequencing technology:

PacBio

IDs: 11027271 [UID] 29149988 [GenBank] 30106978 [RefSeq]

See Genome Information for Aegilops tauschii

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002575655.2	≠	GCF_002575655.2	Aet v5.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_002575655.1	≠	GCF_002575655.1	Aet v4.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	4,218,179,011
Total ungapped length	4,132,318,869
Gaps between scaffolds	0
Number of scaffolds	109,197
Scaffold N50	576,238,907
Scaffold L50	4
Number of contigs	176,979
Contig N50	211,214
Contig L50	5,744
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	109,197

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1D	CM008368.2	=	NC_053035.2	0
Chromosome 2D	CM008369.2	=	NC_053036.2	0
Chromosome 3D	CM008370.2	=	NC_053037.2	0
Chromosome 4D	CM008371.2	=	NC_053038.2	0
Chromosome 5D	CM008372.2	=	NC_053039.2	0
Chromosome 6D	CM008373.2	=	NC_053040.2	0
Chromosome 7D	CM008374.2	=	NC_053041.2	0
unplaced	n/a	n/a	n/a	109,189

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	4,218,064,899	109,196	4,132,204,757	576,238,907	67,782
Chromosome 1D	501,967,303	1	493,263,565	501,967,303	6,649
Chromosome 2D	650,458,083	1	641,444,381	650,458,083	8,119
Chromosome 3D	627,456,150	1	617,475,975	627,456,150	9,396
Chromosome 4D	525,206,139	1	516,234,797	525,206,139	6,216
Chromosome 5D	576,238,907	1	563,498,157	576,238,907	7,583
Chromosome 6D	495,363,004	1	487,283,514	495,363,004	6,218
Chromosome 7D	644,841,383	1	629,502,487	644,841,383	8,626
unplaced	196,533,930	109,189	183,501,881	7,049	14,975

Assembly

Genome Assembly

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Download Assembly

Aet v5.0

See Genome Information for Aegilops tauschii

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear