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Source database (GenBank or RefSeq) File type

ASM277652v3

This assembly has been replaced. See current version

Anomalous assembly.

Organism name:

Piliocolobus tephrosceles (Ugandan red Colobus)

Isolate:

RC106

Sex:

male

BioSample:

SAMN07735529

BioProject:

PRJNA413051

Submitter:

University of Oregon

Date:

2019/12/12

Assembly level:

Chromosome

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_002776525.3 (replaced)

RefSeq assembly accession:

GCF_002776525.3 (replaced)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

PDMG03

Assembly method:

Proximo v. SEPTEMBER-2019

Expected final version:

yes

Genome coverage:

38.61x

Sequencing technology:

Illumina HiSeq

IDs: 5385541 [UID] 15606558 [GenBank] 15651958 [RefSeq]

See Genome Information for Piliocolobus tephrosceles

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002776525.5	=	GCF_002776525.5	ASM277652v5	Chromosome	Latest GenBank, Latest RefSeq
GCA_002776525.4	=	GCF_002776525.4	ASM277652v4	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_002776525.3	=	GCF_002776525.3	ASM277652v3	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_002776525.2	=	GCF_002776525.2	ASM277652v2	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_002776525.1	=	GCF_002776525.1	ASM277652v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

In May 2022 12282 sequences were suppressed because they were found to be contaminants.
In February 2023 2085 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	3,037,997,551
Total ungapped length	2,949,697,222
Gaps between scaffolds	0
Number of scaffolds	46,654
Scaffold N50	131,283,114
Scaffold L50	9
Number of contigs	111,069
Contig N50	98,446
Contig L50	8,493
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	46,654

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM019240.1	=	NC_045434.1	0
Chromosome 2	CM019241.1	=	NC_045435.1	0
Chromosome 3	CM019242.1	=	NC_045436.1	0
Chromosome 4	CM019243.1	=	NC_045437.1	0
Chromosome 5	CM019244.1	=	NC_045438.1	0
Chromosome 6	CM019245.1	=	NC_045439.1	0
Chromosome 7	CM019246.1	=	NC_045440.1	0
Chromosome 8	CM019247.1	=	NC_045441.1	0
Chromosome 9	CM019248.1	=	NC_045442.1	0
Chromosome 10	CM019249.1	=	NC_045443.1	0
Chromosome 11	CM019250.1	=	NC_045444.1	0
Chromosome 12	CM019251.1	=	NC_045445.1	0
Chromosome 13	CM019252.1	=	NC_045446.1	0
Chromosome 14	CM019253.1	=	NC_045447.1	0
Chromosome 15	CM019254.1	=	NC_045448.1	0
Chromosome 16	CM019255.1	=	NC_045449.1	0
Chromosome 17	CM019256.1	=	NC_045450.1	0
Chromosome 18	CM019257.1	=	NC_045451.1	0
Chromosome 19	CM019258.1	=	NC_045452.1	0
Chromosome 20	CM019259.1	=	NC_045453.1	0
Chromosome 21	CM019260.1	=	NC_045454.1	0
Chromosome X	CM019261.1	=	NC_045455.1	0
Chromosome Y	CM019262.1	=	NC_045456.1	0
unplaced	n/a	n/a	n/a	46,631

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,037,997,551	46,654	2,949,697,222	131,283,114	64,415
Chromosome 1	221,045,333	1	215,723,543	221,045,333	3,783
Chromosome 2	193,682,385	1	189,992,765	193,682,385	2,868
Chromosome 3	184,646,964	1	181,357,124	184,646,964	2,759
Chromosome 4	178,867,606	1	174,808,735	178,867,606	2,631
Chromosome 5	168,402,060	1	164,910,691	168,402,060	2,541
Chromosome 6	163,413,076	1	158,980,514	163,413,076	2,608
Chromosome 7	148,656,448	1	144,904,188	148,656,448	2,467
Chromosome 8	147,792,934	1	143,421,721	147,792,934	2,546
Chromosome 9	131,283,114	1	127,455,242	131,283,114	2,235
Chromosome 10	130,810,358	1	127,399,738	130,810,358	2,274
Chromosome 11	128,181,973	1	126,001,373	128,181,973	1,886
Chromosome 12	124,784,683	1	113,134,164	124,784,683	3,110
Chromosome 13	124,059,081	1	121,252,060	124,059,081	1,996
Chromosome 14	111,442,408	1	108,364,168	111,442,408	1,947
Chromosome 15	108,208,424	1	105,639,254	108,208,424	1,697
Chromosome 16	77,097,864	1	72,908,441	77,097,864	1,982
Chromosome 17	74,913,260	1	72,123,547	74,913,260	1,658
Chromosome 18	73,925,647	1	72,699,877	73,925,647	1,140
Chromosome 19	69,320,834	1	66,479,319	69,320,834	1,598
Chromosome 20	58,236,580	1	56,936,030	58,236,580	1,081
Chromosome 21	52,676,213	1	47,577,973	52,676,213	2,016
Chromosome X	95,246,109	1	93,324,699	95,246,109	1,326
Chromosome Y	26,487,807	1	23,991,056	26,487,807	813
unplaced	244,816,390	46,631	240,311,000	9,369	15,453

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ASM277652v3

See Genome Information for Piliocolobus tephrosceles

Pathogen Detection Resources

History (Show revision history)

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