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SCAv2.0

Description:
Whole genome assembly of Melanaphis sacchari version 2
Organism name:
Melanaphis sacchari (aphids)
Infraspecific name:
Strain: LSU
BioSample:
SAMN07757676
BioProject:
PRJNA413550
Submitter:
USDA-ARS Center for Grain and Animal Health Research
Date:
2018/06/22
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002803265.2 (latest)
RefSeq assembly accession:
GCF_002803265.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 4 unlocalized scaffolds on chromosome MT
  • Data displayed for RefSeq version
WGS Project:
PDEX02
Assembly method:
Supernova v. 2
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq Xten

IDs: 1772381 [UID] 6717258 [GenBank] 6731798 [RefSeq]

See Genome Information for Melanaphis sacchari

History (Show revision history)

Comment

Global statistics

Total sequence length300,271,876
Total ungapped length296,746,011
Gaps between scaffolds0
Number of scaffolds1,347
Scaffold N503,012,626
Scaffold L5025
Number of contigs3,172
Contig N50275,006
Contig L50309
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,347

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced300,271,8761,347296,746,0113,012,6261,8250