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Source database (GenBank or RefSeq) File type

Lsat_Salinas_v11

Organism name:

Lactuca sativa (garden lettuce)

Infraspecific name:

Cultivar: Salinas

BioSample:

SAMN33010172

BioProject:

PRJNA173551

Submitter:

Lettuce Genome Sequencing Consortium

Date:

2022/11/23

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002870075.4 (latest)

RefSeq assembly accession:

GCF_002870075.4 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

NBSK02

Assembly method:

Hifiasm v. Dec-2011; BioNano v. Dec-2011; Hi-C v. Dec-2011

Expected final version:

yes

Genome coverage:

35.0x

Sequencing technology:

PacBio Sequel II

IDs: 14482531 [UID] 37583248 [GenBank] 38485118 [RefSeq]

See Genome Information for Lactuca sativa

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002870075.4	≠	GCF_002870075.4	Lsat_Salinas_v11	Chromosome	Latest GenBank, Latest RefSeq
GCA_002870075.3	≠	GCF_002870075.3	Lsat_Salinas_v8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_002870075.2	≠	GCF_002870075.2	Lsat_Salinas_v7	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_002870075.1	≠	GCF_002870075.1	Lsat_Salinas_v7	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	2,590,369,317
Total ungapped length	2,589,031,440
Gaps between scaffolds	0
Number of scaffolds	93
Scaffold N50	324,658,466
Scaffold L50	4
Number of contigs	477
Contig N50	12,524,908
Contig L50	55
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	93

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM022518.2	=	NC_056623.2	0
Chromosome 2	CM022519.2	=	NC_056624.2	0
Chromosome 3	CM022520.2	=	NC_056625.2	0
Chromosome 4	CM022521.2	=	NC_056626.2	0
Chromosome 5	CM022522.2	=	NC_056627.2	0
Chromosome 6	CM022523.2	=	NC_056628.2	0
Chromosome 7	CM022524.2	=	NC_056629.2	0
Chromosome 8	CM022525.2	=	NC_056630.2	0
Chromosome 9	CM022526.2	=	NC_056631.2	0
unplaced	n/a	n/a	n/a	82

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	MK642355.1	=	NC_042756.1
Chloroplast Pltd	AP007232.1	=	NC_007578.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,589,853,228	91	2,588,515,351	324,658,466	384
Chromosome 1	252,620,903	1	252,552,036	252,620,903	29
Chromosome 2	236,378,258	1	236,244,397	236,378,258	43
Chromosome 3	324,658,466	1	324,566,150	324,658,466	47
Chromosome 4	410,295,809	1	410,179,331	410,295,809	52
Chromosome 5	371,842,284	1	371,549,676	371,842,284	43
Chromosome 6	206,656,949	1	206,582,564	206,656,949	35
Chromosome 7	209,897,964	1	209,869,284	209,897,964	33
Chromosome 8	343,517,054	1	343,129,935	343,517,054	58
Chromosome 9	229,423,371	1	229,279,808	229,423,371	44
unplaced	4,562,170	82	4,562,170	91,139	0

Molecule	Total Length
All	516,089
Mitochondrion MT	363,324
Chloroplast Pltd	152,765

Assembly

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Lsat_Salinas_v11

See Genome Information for Lactuca sativa

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear