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ASM301813v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 2014C-3050
BioSample:
SAMN03569438
BioProject:
PRJNA218110
Submitter:
CDC
Date:
2018/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003018135.1 (latest)
RefSeq assembly accession:
GCF_003018135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
47.07x
Sequencing technology:
PacBio

IDs: 1651111 [UID] 6291478 [GenBank] 6307198 [RefSeq]

See Genome Information for Escherichia coli

There are 266204 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/29/2023 01:16:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,843
CDSs (total)::5,715
Genes (coding)::5,314
CDSs (with protein)::5,314
Genes (RNA)::128
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::95
ncRNAs::11
Pseudo Genes (total)::401
CDSs (without protein)::401
Pseudo Genes (ambiguous residues)::0 of 401
Pseudo Genes (frameshifted)::216 of 401
Pseudo Genes (incomplete)::175 of 401
Pseudo Genes (internal stop)::86 of 401
Pseudo Genes (multiple problems)::68 of 401
Pseudo Genes (short protein)::3 of 401
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,753,218
Total ungapped length5,753,218
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003018145.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027472.1=NZ_CP027472.1
Plasmid unnamedCP027473.1=NZ_CP027473.1

Assembly statistics

MoleculeTotal
Length
All5,753,218
Chromosome 5,671,594
Plasmid unnamed81,624

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0578.3887.46
Best-match type99.0578.3887.46

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna