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Source database (GenBank or RefSeq) File type

ASM305278v2

Organism name:: Salmonella enterica subsp. enterica serovar Thompson (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: HFCDC-SM-846
BioSample:: SAMN08903186
BioProject:: PRJNA449415
Submitter:: no
Date:: 2018/05/14
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003052785.2 (latest)
RefSeq assembly accession:: GCF_003052785.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: wgs-assembler v. 12-2017
Expected final version:: yes
Genome coverage:: 89.02x
Sequencing technology:: PacBio

IDs: 1721471 [UID] 6549698 [GenBank] 6565758 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 532121 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003052785.2	=	GCF_003052785.2	ASM305278v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_003052785.1	=	GCF_003052785.1	ASM305278v1	Complete Genome	Replaced GenBank, Replaced RefSeq

Comment

Bacteria and source DNA available from Hefei CDC, China
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::07/20/2023 02:06:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,801
CDSs (total)::4,681
Genes (coding)::4,560
CDSs (with protein)::4,560
Genes (RNA)::120
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::12
Pseudo Genes (total)::121
CDSs (without protein)::121
Pseudo Genes (ambiguous residues)::0 of 121
Pseudo Genes (frameshifted)::50 of 121
Pseudo Genes (incomplete)::89 of 121
Pseudo Genes (internal stop)::26 of 121
Pseudo Genes (multiple problems)::40 of 121
Pseudo Genes (short protein)::1 of 121
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,907,915
Total ungapped length	4,907,915
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP028729.1	=	NZ_CP028729.1
Plasmid p846	CP029249.1	=	NZ_CP029249.1

Molecule	Total Length
All	4,907,915
Chromosome	4,754,975
Plasmid p846	152,940

	ANI	Query coverage	Subject coverage
Declared type	99.00	92.59	91.46
Best-match type	99.00	92.59	91.46

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ASM305278v2

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 532121 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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