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Source database (GenBank or RefSeq) File type

ASM307304v1

Organism name:

Pomacea canaliculata (gastropods)

Isolate:

SZHN2017

Sex:

female

BioSample:

SAMN08443704

BioProject:

PRJNA427478

Submitter:

Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences

Date:

2018/05/11

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003073045.1 (latest)

RefSeq assembly accession:

GCF_003073045.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

PZQS01

Assembly method:

SMARTdenovo v. OCT-2017

Expected final version:

yes

Genome coverage:

60.1x

Sequencing technology:

Illumina HiSeq; PacBio

IDs: 1697791 [UID] 6485528 [GenBank] 6539428 [RefSeq]

See Genome Information for Pomacea canaliculata

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003073045.1	≠	GCF_003073045.1	ASM307304v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Using PacBio, Illumina, and Hi-C data, we constructed a nearly complete genome that includes 14 linkage groups and the mitochondrial genome.

Global statistics

Total sequence length	440,159,624
Total ungapped length	440,087,424
Gaps between scaffolds	0
Number of scaffolds	24
Scaffold N50	31,531,291
Scaffold L50	6
Number of contigs	746
Contig N50	1,072,857
Contig L50	121
Total number of chromosomes and plasmids	15
Number of component sequences (WGS or clone)	24

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM009758.1	=	NC_037590.1	0
Linkage Group LG2	CM009759.1	=	NC_037591.1	0
Linkage Group LG3	CM009760.1	=	NC_037592.1	0
Linkage Group LG4	CM009761.1	=	NC_037593.1	0
Linkage Group LG5	CM009762.1	=	NC_037594.1	0
Linkage Group LG6	CM009763.1	=	NC_037595.1	0
Linkage Group LG7	CM009764.1	=	NC_037596.1	0
Linkage Group LG8	CM009765.1	=	NC_037597.1	0
Linkage Group LG9	CM009766.1	=	NC_037598.1	0
Linkage Group LG10	CM009767.1	=	NC_037599.1	0
Linkage Group LG11	CM009768.1	=	NC_037600.1	0
Linkage Group LG12	CM009769.1	=	NC_037601.1	0
Linkage Group LG13	CM009770.1	=	NC_037602.1	0
Linkage Group LG14	CM009771.1	=	NC_037603.1	0
unplaced	n/a	n/a	n/a	9

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	440,143,917	23	440,071,717	31,531,291	722
Linkage Group LG1	45,418,568	1	45,412,068	45,418,568	65
Linkage Group LG2	45,157,847	1	45,150,747	45,157,847	71
Linkage Group LG3	43,189,359	1	43,182,559	43,189,359	68
Linkage Group LG4	34,737,321	1	34,732,421	34,737,321	49
Linkage Group LG5	34,494,602	1	34,489,102	34,494,602	55
Linkage Group LG6	31,531,291	1	31,525,991	31,531,291	53
Linkage Group LG7	30,920,076	1	30,911,376	30,920,076	87
Linkage Group LG8	29,527,706	1	29,523,706	29,527,706	40
Linkage Group LG9	27,161,898	1	27,157,498	27,161,898	44
Linkage Group LG10	26,524,634	1	26,521,734	26,524,634	29
Linkage Group LG11	24,344,826	1	24,339,126	24,344,826	57
Linkage Group LG12	23,662,357	1	23,659,357	23,662,357	30
Linkage Group LG13	23,556,918	1	23,552,618	23,556,918	43
Linkage Group LG14	19,366,143	1	19,363,043	19,366,143	31
unplaced	550,371	9	550,371	63,879	0

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ASM307304v1

See Genome Information for Pomacea canaliculata

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear