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Hsal_v8.5

  • Anomalous assembly.
Organism name:
Harpegnathos saltator (Jerdon's jumping ant)
Infraspecific name:
Strain: DR-91
Sex:
female
BioSample:
SAMN08810140
BioProject:
PRJNA445978
Submitter:
University of Pennsylvania
Date:
2018/06/14
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003227715.1 (replaced)
RefSeq assembly accession:
GCF_003227715.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QANH01
Assembly method:
canu v. 1.3
Expected final version:
yes
Genome coverage:
70x
Sequencing technology:
PacBio

IDs: 1752791 [UID] 6649758 [GenBank] 6700918 [RefSeq]

See Genome Information for Harpegnathos saltator

There are 2 assemblies for this organism

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History (Show revision history)

Comment

In June 2022 7 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length334,536,844
Total ungapped length333,599,918
Gaps between scaffolds0
Number of scaffolds857
Scaffold N501,078,644
Scaffold L50101
Number of contigs1,092
Contig N50911,506
Contig L50118
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)857

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced334,536,844857333,599,9181,078,6442350