Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Xiphophorus_hellerii-4.1

Organism name:

Xiphophorus hellerii (green swordtail)

Infraspecific name:

Strain: 12219

Sex:

male

BioSample:

SAMN09545741

BioProject:

PRJNA290782

Submitter:

McDonnell Genome Institute - Washington University School of Medicine

Date:

2019/12/05

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003331165.2 (latest)

RefSeq assembly accession:

GCF_003331165.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

QPIH02

Assembly method:

HGAP4 v. 2018

Expected final version:

yes

Genome coverage:

68.0x

Sequencing technology:

PacBio Sequel; Illumina

IDs: 5380271 [UID] 15583898 [GenBank] 16237838 [RefSeq]

See Genome Information for Xiphophorus hellerii

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003331165.2	≠	GCF_003331165.1	Xiphophorus_hellerii-4.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_003331165.1	n/a	n/a	Xiphophorus_hellerii-4.0	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	732,906,125
Total ungapped length	730,778,326
Gaps between scaffolds	0
Number of scaffolds	87
Scaffold N50	32,404,057
Scaffold L50	11
Number of contigs	746
Contig N50	7,084,538
Contig L50	28
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	272

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM010375.2	=	NC_045672.1	0
Chromosome 2	CM010376.2	=	NC_045673.1	0
Chromosome 3	CM010377.2	=	NC_045674.1	0
Chromosome 4	CM010378.2	=	NC_045675.1	0
Chromosome 5	CM010379.1	=	NC_045676.1	0
Chromosome 6	CM010380.2	=	NC_045677.1	0
Chromosome 7	CM010381.2	=	NC_045678.1	0
Chromosome 8	CM010382.2	=	NC_045679.1	0
Chromosome 9	CM010383.2	=	NC_045680.1	0
Chromosome 10	CM010384.2	=	NC_045681.1	0
Chromosome 11	CM010385.2	=	NC_045682.1	0
Chromosome 12	CM010386.2	=	NC_045683.1	0
Chromosome 13	CM010387.2	=	NC_045684.1	0
Chromosome 14	CM010388.2	=	NC_045685.1	0
Chromosome 15	CM010389.2	=	NC_045686.1	0
Chromosome 16	CM010390.2	=	NC_045687.1	0
Chromosome 17	CM010391.2	=	NC_045688.1	0
Chromosome 18	CM010392.2	=	NC_045689.1	0
Chromosome 19	CM010393.2	=	NC_045690.1	0
Chromosome 20	CM010394.2	=	NC_045691.1	0
Chromosome 21	CM010395.1	=	NC_045692.1	0
Chromosome 22	CM010396.2	=	NC_045693.1	0
Chromosome 23	CM010397.2	=	NC_045694.1	0
Chromosome 24	CM010398.2	=	NC_045695.1	0
unplaced	n/a	n/a	n/a	62

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	732,889,490	86	730,761,691	32,404,057	659
Chromosome 1	33,455,058	1	33,452,961	33,455,058	9
Chromosome 2	33,147,851	1	33,023,781	33,147,851	30
Chromosome 3	33,985,125	1	33,930,225	33,985,125	10
Chromosome 4	35,268,414	1	35,234,449	35,268,414	13
Chromosome 5	34,474,212	1	34,471,830	34,474,212	8
Chromosome 6	30,798,394	1	30,769,896	30,798,394	15
Chromosome 7	32,705,459	1	32,412,287	32,705,459	25
Chromosome 8	29,861,225	1	29,858,566	29,861,225	22
Chromosome 9	33,125,647	1	32,919,281	33,125,647	30
Chromosome 10	26,477,563	1	26,253,693	26,477,563	16
Chromosome 11	29,512,100	1	29,456,205	29,512,100	29
Chromosome 12	34,595,283	1	34,594,563	34,595,283	7
Chromosome 13	29,701,587	1	29,697,867	29,701,587	37
Chromosome 14	29,572,159	1	29,564,725	29,572,159	49
Chromosome 15	26,169,733	1	26,163,648	26,169,733	26
Chromosome 16	26,312,210	1	26,136,972	26,312,210	14
Chromosome 17	20,915,083	1	20,906,286	20,915,083	43
Chromosome 18	34,926,625	1	34,732,800	34,926,625	35
Chromosome 19	29,276,582	1	29,226,752	29,276,582	37
Chromosome 20	34,961,375	1	34,926,892	34,961,375	41
Chromosome 21	26,329,792	1	26,253,028	26,329,792	4
Chromosome 22	31,104,622	1	31,044,331	31,104,622	46
Chromosome 23	32,404,057	1	32,402,659	32,404,057	6
Chromosome 24	17,660,500	1	17,184,000	17,660,500	60
unplaced	6,148,834	62	6,143,994	250,000	47

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Xiphophorus_hellerii-4.1

See Genome Information for Xiphophorus hellerii

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear