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ASM366606v1

Organism name:
Haloarcula sp. Atlit-7R (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: Atlit-7R
BioSample:
SAMN09668315
BioProject:
PRJNA431124
Submitter:
Tel Aviv University
Date:
2018/10/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003666065.1 (latest)
RefSeq assembly accession:
GCF_003666065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QXIK01
Assembly method:
SPAdes v. 3.7.0
Expected final version:
yes
Genome coverage:
57x
Sequencing technology:
Illumina MiSeq

IDs: 2022521 [UID] 7593578 [GenBank] 7608918 [RefSeq]

See Genome Information for Haloarcula sp. Atlit-7R

History (Show revision history)

Comment

Bacteria available from Gophna lab, Tel Aviv University.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/04/2018 16:44:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,679
CDS (total)::4,592
Genes (coding)::4,444
CDS (coding)::4,444
Genes (RNA)::87
rRNAs::4, 6, 1 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 23S)
partial rRNAs::2, 6 (5S, 16S)
tRNAs::74
ncRNAs::2
Pseudo Genes (total)::148
Pseudo Genes (ambiguous residues)::0 of 148
Pseudo Genes (frameshifted)::69 of 148
Pseudo Genes (incomplete)::82 of 148
Pseudo Genes (internal stop)::45 of 148
Pseudo Genes (multiple problems)::40 of 148
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,544,431
Total ungapped length4,544,431
Number of contigs136
Contig N50343,423
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)136

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,544,4311364,544,431343,42300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haloarcula sp. Atlit-7RHaloarcula sp. Atlit-7R

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001280425.1Haloarcula rubripromontoriitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.4471.0181.26

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna