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AHAU_CSS_1

Organism name:
Camellia sinensis (black tea)
Infraspecific name:
Cultivar: Shuchazao
BioSample:
SAMN06329939
BioProject:
PRJNA510226
Submitter:
Anhui Agricultural University
Date:
2019/02/11
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004153795.1 (replaced)
RefSeq assembly accession:
GCF_004153795.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
SDRB01
Assembly method:
Platanus v. 1.24; SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
300.0x
Sequencing technology:
Illumina Hiseq 2500; PacBio RSII

IDs: 2256051 [UID] 8467758 [GenBank] 8645978 [RefSeq]

See Genome Information for Camellia sinensis

There are 17 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,105,370,065
Total ungapped length2,860,460,702
Gaps between scaffolds0
Number of scaffolds14,028
Scaffold N501,388,941
Scaffold L50692
Number of contigs93,351
Contig N5067,050
Contig L5012,505
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)14,028

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,105,212,96214,0272,860,303,5991,388,94179,3230
MoleculeTotal
Length
Chloroplast Pltd157,103