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ASM521761v1

Organism name:
Brevibacillus antibioticus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TGS2-1
BioSample:
SAMN11431369
BioProject:
PRJNA532994
Submitter:
Nakdonggang National Institute of Biological Resources
Date:
2019/05/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_005217615.1 (latest)
RefSeq assembly accession:
GCF_005217615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SZNK01
Assembly method:
HGAP v. 2.3
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio RSII

IDs: 2788241 [UID] 9820598 [GenBank] 9838988 [RefSeq]

See Genome Information for Brevibacillus antibioticus

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/01/2019 14:08:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,948
CDSs (total)::5,773
Genes (coding)::5,497
CDSs (with protein)::5,497
Genes (RNA)::175
rRNAs::14, 15, 15 (5S, 16S, 23S)
complete rRNAs::14, 15, 15 (5S, 16S, 23S)
tRNAs::126
ncRNAs::5
Pseudo Genes (total)::276
CDSs (without protein)::276
Pseudo Genes (ambiguous residues)::0 of 276
Pseudo Genes (frameshifted)::137 of 276
Pseudo Genes (incomplete)::166 of 276
Pseudo Genes (internal stop)::83 of 276
Pseudo Genes (multiple problems)::93 of 276
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,181,736
Total ungapped length6,181,736
Number of contigs2
Contig N506,166,726
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,181,73626,181,7366,166,72600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Brevibacillus antibioticusBrevibacillus antibioticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003013475.1Brevibacillus porteritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.7181.5678.03

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected