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ASM593035v1

Organism name:
Paenibacillus sinopodophylli (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CCTCC AB 2016047
BioSample:
SAMN11877707
BioProject:
PRJNA545180
Submitter:
Yunnan University
Date:
2019/06/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_005930355.1 (latest)
RefSeq assembly accession:
GCF_005930355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VDBO01
Assembly method:
SPAdes v. 3.13
Expected final version:
yes
Genome coverage:
524.0x
Sequencing technology:
Illumina HiSeq

IDs: 3237541 [UID] 10791838 [GenBank] 10869888 [RefSeq]

See Genome Information for Paenibacillus sinopodophylli

History (Show revision history)

Comment

Global statistics

Total sequence length7,041,010
Total ungapped length7,039,310
Gaps between scaffolds0
Number of scaffolds110
Scaffold N50521,485
Scaffold L503
Number of contigs127
Contig N50399,076
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)110

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,041,0101107,039,310521,485170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenibacillus sinopodophylliPaenibacillus sinopodophylli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006542765.1Paenibacillus luteustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.9531.2325.83

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected